If you choose zero initial weights, then the perceptron algorithm's learning rate $\eta$ has no influence on a neuron's predicted class label.
This is because the decision function used in the perceptron algorithm depends only on the sign of $z$:
$$
\phi(z) = \begin{cases} 1 &\text{ if } z \ge 0\\ -1 &\text{ otherwise.} \end{cases}
$$
Consider a perceptron algorithm with a single neuron.
(I will write ${\bf x} \cdot {\bf y}$ for the vector product ${\bf x}^T {\bf y}$ to avoid ugly double superscripts).
- Pick an initial weight vector ${\bf w}^{(0)}.$
- Plug in the first input vector ${\bf x^{(1)}}$ and predict the class label
$$
\hat{y}^{(1)} = \phi({\bf w}^{(0)} \cdot {\bf x}^{(1)}).
$$
This gives the weight update
$$
\Delta {\bf w}^{(1)} = \eta (y^{(1)} - \hat{y}^{(1)}){\bf x}^{(1)},
$$
where $\eta \in (0, 1)$ is the learning rate and $y^{(1)}$ is the true class label.
The new weights are ${\bf w}^{(1)} = {\bf w}^{(0)} + \Delta {\bf w}^{(1)}.$
- Similarly, plug in our the input vector ${{\bf x}^{(2)}}$ and predict the class label
$$
\hat{y}^{(2)} = \phi({\bf w}^{(1)} \cdot {\bf x}^{(2)}).
$$
This gives the weight update
$$
\Delta {\bf w}^{(2)} = \eta (y^{(2)} - \hat{y}^{(2)}){\bf x}^{(2)},
$$
where $y^{(2)}$ is the true class label.
Notice that $\Delta{\bf w}^{(2)}$ implicitly depends on $\Delta{\bf w}^{(1)}$, which in turn implicitly depends on ${\bf w}^{(0)}$.
Let us unravel these dependencies by plugging in:
\begin{align*}
\Delta {\bf w}^{(2)} &= \eta \big(y^{(2)} - \hat{y}^{(2)}\big){\bf x}^{(2)} \\
&= \eta \big(y^{(2)} - \phi({\bf w}^{(1)} \cdot {\bf x}^{(2)}) \big) {\bf x}^{(2)} \\
&= \eta \big(y^{(2)} - \phi\big( ({\bf w}^{(0)} + \Delta {\bf w}^{(1)}) \cdot {\bf x}^{(2)} \big) \big) {\bf x}^{(2)}\\
&= \eta \Big(y^{(2)} - \phi\Big( \big({\bf w}^{(0)} + \eta (y^{(1)} - \hat{y}^{(1)}){\bf x}^{(1)}\big) \cdot {\bf x}^{(2)} \Big) \Big) {\bf x}^{(2)} \\
&= \eta \Big(y^{(2)} - \phi\Big( \big({\bf w}^{(0)} + \eta (y^{(1)} - \phi({\bf w}^{(0)} \cdot {\bf x}^{(1)})){\bf x}^{(1)}\big) \cdot {\bf x}^{(2)} \Big) \Big) {\bf x}^{(2)}.
\end{align*}
Now suppose we have initialized with zero weights: ${\bf w}^{(0)} = {\bf 0}.$
Since ${\bf 0} \cdot {\bf x}^{(1)} = 0$ and $\phi(0) = 1,$ the last line in this calculation simplifies to
$$
\Delta {\bf w}^{(2)} = \eta \Big(y^{(2)} - \phi\Big( \eta (y^{(1)} - 1){\bf x}^{(1)} \cdot {\bf x}^{(2)} \Big) \Big) {\bf x}^{(2)}
$$
Let us zoom in here and look at $\phi$ and its argument:
$$
\phi\Big( \eta (y^{(1)} - 1){\bf x}^{(1)} \cdot {\bf x}^{(2)} \Big).
$$
Since $\eta > 0$, it does not change the sign of $(y^{(1)} - 1){\bf x}^{(1)} \cdot {\bf x}^{(2)}.$ But the sign is all that matters to the function $\phi$.
So we can simply remove $\eta$ from the function argument without changing the result:
$$
\Delta {\bf w}^{(2)} = \eta \Big(y^{(2)} - \phi\Big( (y^{(1)} - 1){\bf x}^{(1)} \cdot {\bf x}^{(2)} \Big) \Big) {\bf x}^{(2)}.
$$
The same arguments hold for $\Delta {\bf w}^{(3)}, \Delta {\bf w}^{(4)}, \dots$
It follows that
$$\Delta {\bf w}^{(i)} = \eta * \text{[Something that does not depend on $\eta$]}$$
for every $i = 1, 2, \dots$
This is what your quote means by saying that the parameter $\eta$ "affects only the scale of the weight vector, not the direction."
For nonzero initial weights, this is different. Recall the last line of the long calculation $\Delta {\bf w}^{(2)} = \dots$ above and zoom in again on the function $\phi$ and its argument:
$$
\phi\Big( \big({\bf w}^{(0)} + \eta (y^{(1)} - \phi({\bf w}^{(0)} \cdot {\bf x}^{(1)})){\bf x}^{(1)}\big) \cdot {\bf x}^{(2)} \Big).
$$
If ${\bf w}^{(0)}$ is nonzero, then $\eta$ may affect the sign of the function argument, and therefore the predicted class label.