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I am running pam function for kmedoid under cluster package in R. My dataset has 1 million entries. It's throwing error saying

Have 1 million observation but not more than 65536 observation allowed

Please suggest the solution

Thanks in advance :)

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If you read the package News section you will find:

pam() now signals an error when there are more than 65536 observational units (whereas it could segfault previously), thanks to a patch from Mikko Korpela, Helsinki.

So it seems there isn't a solution.

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  • $\begingroup$ Looks like they're only using 16-bit integers to store dataset size. Oof. $\endgroup$ – shadowtalker Oct 19 '18 at 4:04

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