I have a data set with categorical variables. I have defined a decision tree algorithm and transformed these columns to numerical equivalent using one hot encoding functionality in sklearn:

Create Decision Tree classifer object:

clf2 = DecisionTreeClassifier(criterion = 'entropy')
pipe = make_pipeline(column_trans, clf2)            # (1)


column_trans = make_column_transformer(
             remainder = 'passthrough')

Now when I built the decision tree without using sklearn but using pandas directly for categorical feature encoding, I was able to find the suitable candidates for alpha to prune the decision tree by

path = clf.cost_complexity_pruning_path(X_train, y_train)
ccp_alphas = path.ccp_alphas
ccp_alphas = ccp_alphas[:-1] #remove max value of alpha

where as now given that my model is baked into pipe argument in (1) when I try to find candidate alphas

path = pipe.cost_complexity_pruning_path(X_train2, y_train2)

I get an error message saying pipe does not have the attribute called cost complexity pruning. and looking at all the attributes available to pipe, I can't find cost complexity pruning as well.

Is it only possible to do cost complexity pruning if you are building the model without using the pipe functionality in Sklearn?


Pipelines themselves don't generally carry the methods and attributes of the final estimator, aside from basics like predict, predict_proba, transform. If you need to access a method of a step, you should access the step itself using one of:


However, in this case it's a little trickier, because cost_complexity_pruning_path needs the dataset X, y, but you need your pipeline's transformer to apply to it first. It's a little cumbersome, but I think this should work and is relatively straightforward:

    pipe[:-1].transform(X, y),

(Note that pipe[-1] is the final estimator in the pipeline, and pipe[:-1] is every step except the last.)


I have had a first crack at coming up with a workaround, although its ugly and won't scale:

alpha_candidates = (np.arange(0.0,0.5, 0.001)).tolist()
alpha_accuracy_list = []
# Create Decision Tree classifer object
for i in alpha_candidates:
    clf2_entropy_alpha = DecisionTreeClassifier(criterion = 'entropy', ccp_alpha= i,random_state=42)
    pipe = make_pipeline(column_trans, clf2_entropy_alpha)
    y_pred2_entropy_alpha = pipe.predict(X_test2)
    alpha_accuracy = [i, metrics.accuracy_score(y_test2, y_pred2_entropy_alpha)] 



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