Questions tagged [dbscan]
DBSCAN means density-based spatial clustering of applications with noise and is a popular density-based cluster analysis algorithm.
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How to use Cosine Distance matrix for Clustering algorithms like mean-shift, DBSCAN, and optics?
I am trying to compare different clustering algorithms for my text data. I first calculated the tf-idf matrix and used it for the cosine distance matrix (cosine similarity). Then I used this distance ...
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0answers
19 views
Estimating minPts in DBSCAN for document layout clustering
I am trying to choose parameters for DBSCAN clustering algorithm, in particular minPts.
The Wikipedia article suggests a rule of thumb to derive minPts from the number of dimensions D in the data set....
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2answers
35 views
Plots of data using DBSCAN algorithm not making sense
I am using clustering for my data. Since the DBSCAN algorithm will also tell me an estimate of clusters that I can use, I have used DBSCAN. I have tried for the ...
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2answers
48 views
Clustering Small Text Descriptions
Im presented with a unique text classification problem.
Im given a list of descriptions each containing 3-8 words. I know that there are some descriptions that are nearly the same, but the majority ...
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1answer
20 views
Recommendation needed for unsupervised clustering on mixed data task [closed]
I have a task to perform unsupervised cluster analysis on mixed datatypes: images, physical and business measures – continuous and categorical.
Businesswise: there are images of products and ...
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1answer
46 views
what arguments should I pass to dbscan or optic in order to divide the data in a specific way
I have thousands of very similar datasets that needs to be divided in diagonal way to two groups.
for example:
and
I tried to play with the argument of dbscan and optic as epsilon and minPoints and ...
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2answers
46 views
Is it safe to use labels created from unsupervised model to train a supervised model using the same data?
I have a dataset where I have to detect anomalies. Now, I use a subset of the data(let's call that subset A) and apply the DBSCAN algorithm to detect anomalies on set A.Once the anomalies are detected,...
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2answers
103 views
The actual results and results from pickle files are not matching in pandas for DBSCAN clustering
I've built a DBSCAN clustering model. The output result and the result after using the pickle files are not matching.
Based on HD and MC column, I am clustering WT column.
...
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1answer
44 views
T-DBSCAN - Implementing STOP logic
I am attempting to implement the T-DBSCAN algorithm described in T-DBSCAN: A Spatiotemporal Density Clustering for GPS Trajectory Segmentation. I have been able to implement most of the logic between ...
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1answer
22 views
Are DBSCAN and dbscan from the sklearn.cluster package different?
I'm new to DBSCAN. I was looking at a few examples online and came across a few instances where the following lines were used while importing the dbscan module:
<...
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1answer
326 views
How to properly use approximate_predict() with HDBSCAN clusterer for text clustering (NLP)?
I have approached text clustering using HDBSCAN based on this article which describes how to do this in R. I've re-written this in Python using this library. The approach is to first calculate TF-IDF ...
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18 views
How can I create a density reachble algorithm in DBSCAN
I am new to data science and I am trying to create an algorithm for the DBSCAN. I can label each point as core-border-noise. But after this step I am stuck. How can I seperate the density reachable ...
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20 views
DBSCAN: How does a quantile of kNN relate to the share core points?
I read this answer by Anony-Mousse to an other question related to density based clustering and how to potentially come up with an eps. It states, that if you want 90% of you points to be core points, ...
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1answer
259 views
DBSCAN clustering on document [updated]?
I am new in topic modeling and text clustering domain and I am trying to learn more. I would like to use the DBSCAN to cluster the text data. There are many posts and sources on how to implement the ...
0
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1answer
65 views
Clustering based on geolocation pair
I am trying to process a large set of location data where a list of start and end coordinate is given. For example,
...
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0answers
42 views
How to find anomalies/outliers in Panel Data?
I have panel data based on 900000 different entities with 384 time steps and the data is not normally distributed. I am looking for outliers/anomalies, this is unsupervised as I have no examples of ...
0
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1answer
56 views
Preparing dataframe to carry k-means clustering [closed]
Im trying to apply 3 different algorithms of clustering on my dataset.
to check which one fits the best. I'm confused how should I convert my dataframe
-k-means
-DBSCAN
-hierarchical clustering
...
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2answers
4k views
KMeans vs. DBSCAN
I am trying to understand some basic clustering techniques. What is the main difference between KMeans and DBSCAN? Can we use both techniques for the same problem?
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2answers
2k views
How do we interpret the outputs of DBSCAN clustering?
I am starting to learn DBSCAN for clustering but the interpretation part of it seems to be tricky to understand.
...
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0answers
30 views
Measure of variety within list/cluster
I have a dataset of about 53000 points. It has been clustered twice, based on two sets of unrelated attributes. For the first clustering (clustering 1) I used DBScan, and it ended up with about 700 ...
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1answer
216 views
How do I right feature selection for DBSCAN?
I want to use DBSCAN to recognize any clusters within all text elements from the DOM tree of any webpage. For example all menu items shall be clustered separatey to all main content or footer elements....
2
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2answers
124 views
Clustering 1-d array with constraints?
I have following kind of 1-d array data to cluster with a few constraints:
The array has length from 50 to 300, floating, some of them close to 0 and some far away.
Goal: divide the array into n ...
2
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1answer
70 views
Is there an oriented clustering algorithm?
I'm looking for a clustering algorithm that will make cluster depending on a orientation. The DBSCAN algorithm cluster points based on a constant radius :
https://upload.wikimedia.org/wikipedia/...
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0answers
155 views
Clustering events in a sequence.
I've a sequence of recurring events I want to group together into representing different operation activities of the underlying process.
1) These events might potentially have an order in their ...
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0answers
427 views
Is my data good for (DBSCAN) clustering?
I have a particular dataset consisting of 50k elements with 40 features each. I want to try to cluster the data as it is, without any dimensionality reduction. The main algorithm I am considering is ...
1
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1answer
649 views
DBSCAN - Space complexity of O(n)?
According to Wikipedia, "the distance matrix of size $\frac{(n^2-n)}{2}$ can be materialized to avoid distance recomputations, but this needs $O(n^2)$ memory, whereas a non-matrix based implementation ...
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3answers
920 views
What is slowing down classic DBSCAN algorithm
How to apply CSR Matrix on DBSCAN algorithm in python without using any libraries?
Update: Matrix size (8580, 126356)
I have given a shot and implemented the algorithm. It runs rather slow. I guess ...
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2answers
89 views
Clustering of variants of similar news articles
We have data of several news sites, having quite literally millions of entries. As each news site publishes their own version of the news (also each news site may publish several different version of ...
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1answer
5k views
Python clustering and labels
i'm currently experimenting with scikit and the DBSCAN algorithm. And i'm wondering how to combine the data with the labels to write them into a new file. I'd also like to understand how the labels ...
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1answer
43 views
How to select the second point where derivative is greater than 1 in r? [closed]
I'm looking for the exact value of epsilon to run the DBSCAN clustering algorithm.
Here's the KNN distance plot.
This chart ...
0
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2answers
42 views
Testing unsupervised clustering
Assume we train a KMeans model using data X. This will give a set of centroids that can be used to cluster data X* using a Nearest Centroid Classifier.
If we use a density-based model such as DBSCAN ...
1
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1answer
534 views
Scaling DBSCAN clustering - minHash?
Applying density based clustering (DBSCAN) on $50k$ data points and about $2k$-$4k$ features, I achieve the desired results.
However, scaling this to $10$ million data points requires a creatively ...
0
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1answer
206 views
Clustering documents - how to evaluate results?
I'm using DBSCAN clustering on a set of documents. The documents' content was converted to TF-IDF matrix, and I'd like to find consistent ways to evaluate the clusters when no added information is ...
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3answers
2k views
Can you l2 normalize word2vec vectors for density clustering?
I have a situation where I have to cluster word2vec vectors (200 length dimension vectors on a very large corpus). I decided to use Density based clustering (DBSCAN, HDBSCAN) because my dataset is ...
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1answer
3k views
How to use precomputed distance matrix and min_sample for DBSCAN clustering method?
I want to perform DBSCAN on my datapoints, but I don't have access to the data, I just have the pairwise distance of datapoints. Additionally, I have no idea about the number of clusters but I do want ...
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2answers
325 views
Which Clustering algorithm to use for unique 4Dimension dataset before feeding to correlation?
Lets give an example
X: 1 2 3 4 5
Y: .9 .91 .92 .93 .94
Z: 20 36 999 211
M. 4000 3456 1 0
When I have such dataset, Which clustering algorithm to choose ? Also, ...
0
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1answer
202 views
How to Interpret the output of PCA?
I have dataset of 50000 values (rows) and 1000 variables (columns). Since this is high dimensional, I am unable to work with just DBSCAN.
So I am trying to use PCA (principle component analysis). ...
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0answers
148 views
Clustering with restrictions - Silhouette and C index metrics
I am working on clustering with DBSCAN but with a certain constraint: the points inside a cluster have to be not only near in a Euclidean distance way but also near in a geographic distance way. It is ...
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1answer
14k views
Knn distance plot for determining eps of DBSCAN
I would like to use the knn distance plot to be able to figure out which eps value should I choose for the DBSCAN algorithm.
Based on this page:
The idea is to calculate, the average of the ...
4
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1answer
13k views
How to plot/visualize clusters in scikit-learn (sklearn)?
I have done some clustering and I would like to visualize the results.
Here is the function I have written to plot my clusters:
...
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2answers
665 views
How are clusters from DBSCAN sometimes non-convex?
I've been using clustering in my bag of ML techniques for quite some time now, and I've never found a satisfying answer to this question.
In DBSCAN, we define a maximum radius with which to form ...
4
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1answer
919 views
Clustering pair-wise distance dataset
I have generated a dataset of pairwise distances as follows:
id_1 id_2 dist_12
id_2 id_3 dist_23
I want to cluster this data so as to identify the pattern. I ...
