Questions tagged [pytorch-geometric]
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How to implement edge feature in message passing algorithm of Pytorch Geometric?
I am trying to implement a custom message passing function $ x^k_i = x^{k-1}_i + m^k_i$ where $x_i$ is the node embedding of the i'th node and $m^k_i$ is the message getting delivered at the i'th node ...
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pytorch-geometric why size of num_node_features as input of GCN
Following a lecture about GCN and going through documentation: https://pytorch-geometric.readthedocs.io/en/latest/notes/introduction.html#learning-methods-on-graphs
In ...
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Is it possible to combine models in pytorch and pytorch geometric?
I am working on a node classification problem with graphical data. I've used PyTorch to classify nodes by simply applying a network to the individual nodes (e.g., ignoring graphical structure), and I'...
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My model is not learning
I am using the ogb molhiv dataset for graph classification, I imported the data and created the DataLoader following the ogb documentation. The data is composed of 41127 graphs and there are 2 classes....
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How to extract node embeddings from PyTorch Geometric GAT model?
Dataset Structure: Temporal directed graph; Nodes have features; Edges don't have features; Nodes are labelled. Using the Elliptic Dataset
Task: Classify nodes/ Predict node labels.
Data Structure: 2 <...
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Captum vs GNNExplainer for explainability in Graph Neural Networks
I'm new to Graph Neural Networks and interested in exploring frameworks that allow the identification of nodes/edges that underlie prediction.
I came across :
(1) a model architecture (GNNExplainer) ...
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Discrepancy between pytorch data and the corresponding networkx graph
I have generated an undirected graph using pytorch_geometric's data object. I used to_networkx functionality of pytorch_geometric to convert it to an undirected <...
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Dying gradient issue in Graph Neural Networks
I am using Pytorch-Geometric library to implement a Graph Convolutional Layer(GCN) followed by few linear layers for a prediction task. But after training on graphs with np. of nodes being 10K and no. ...
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How to apply Geomertic mean in python
I am trying to built a function to calculate the Geometric mean for Growth column and Avg_growth.
Year
Company Name
FH_PBIDT
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Weird train and validation curves
I would like to train a GCN for protien-ligand binding affinity regression. I use GCNConv from pytorch geometric, ReLU for all activations and Dropout (0.2) after 2 dense layers each. Using ReLU for ...
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What is the difference between FC and MLP in as used in PointNet?
I am trying to understand the PointNet network for dealing with point clouds and struggling with understanding the difference between FC and MLP:
"FC is fully connected layer operating on each ...
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Graph Embedding Vs Graph Convolution Network
I'm new in Graph-Embedding and GCN(Graph/Geometric Convolution Network).
I'm confused and not very much sure about "How training works in GCN"?
As per my understanding, GCN training data will be ...
- 1,232
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What does the collate function in pytorch (geometric)?
I am creating a message passing neural network and have some issues with the dataset creation. In pytorch (geometric) it is recommended to create a dataset with the following class. I wonder what is ...
- 694
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How to use Graph Neural Network to predict relationships between nodes with pytorch_geometric?
Let's say I have a partly connected graph that represents members of many unrelated communities. I would like to predict the possible friendships between members of the same community: on an sliding ...
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