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I am new to D3 programming (any programming, for that matter). I have protein-protein interaction data in JSON format and csv format. I would like to use that data for network visualization.

Data attributes: Protein Name, Protein Group, Protein type, Protein Source Node, Protein Target Node

Can anyone suggest good network visualizations for such data. How does it work with hive plots?

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  • $\begingroup$ I would recommend to split up your question in parts and narrow down on certain topics. If I understand your question correctly you are seeking to advise on (1) plotting protein data, (2) plotting data stored in JSON and csv format, (3) plotting in D3 and hive. Could you rephrase your question so that it narrows down on just a single question? $\endgroup$
    – Stereo
    Commented Oct 16, 2016 at 13:13

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Why dont you have a look at the following example? http://bl.ocks.org/mbostock/2066421

You can also find a fiddle here: http://jsfiddle.net/boatrokr/rk2s5/

Pay attention to the part where the links are defined.

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Take a look at this interactive chart gallery- Visual Index simple to use and works just fine with any type of data.

Apart from this you can also give a try to any of these examples.

Hope it helps!

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